Tya S. Chuanromanee, Jim I. Cohen, and Gillian L. Ryan. 2019. Morphological Analysis of Size and Shape (MASS) for Leaves. Submitted to Applications in Plant Sciences.
Source code can be found here:

Uma Ramabadran, Gillian Ryan, Xuan Zhou, Susan Farhat, Felicia Manciu, Yigang Tong, Ryan Ayler, and Graham Garner. 2017. Reduced Graphene Oxide on Nickel Foam for Supercapacitor Electrodes. Energy Materials. 10: 1295.

Gillian L. Ryan, Danielle Holz, Sawako Yamashiro, Daisuke Taniguchi, Naoki Watanabe, and Dimitrios Vavylonis. 2017. Cell Protrusion and Retraction Driven by Fluctuations in Actin Polymerization: A Two-Dimensional Model. Cytoskeleton. 74:490-503.

Sawako Yamashiro, Hiroaki Mizuno, Matthew B. Smith, Gillian L. Ryan, Tai Kiuchi, Dimitrios Vavylonis, and Naoki Watanabe. 2014. New single-molecule speckle microscopy reveals modification of the retrograde actin flow by focal adhesions at nanometer scales. Mol. Biol. Cell. 25:1010-1024.

Gillian L. Ryan, Naoki Watanabe, and Dimitrios Vavylonis. 2013. Image Analysis Tools to Quantify Cell Shape and Protein Dynamics near the Leading Edge. Cell Structure and Function. 19:1-7.

Gillian L. Ryan, Naoki Watanabe, and Dimitrios Vavylonis. 2012. A review of models of fluctuating protrusion and retraction patterns at the leading edge of motile cells. Cytoskeleton. 69: 195-206.

Gillian L. Ryan, Heather M. Petroccia, Naoki Watanabe, and Dimitrios Vavylonis. 2012. Excitable Actin Dynamics in Lamellipodial Protrusion and Retraction. Biophysical Journal 102: 1493-1502.

A. Kayitmazer, Bonnie Quinn, Kozue Kimura, Gillian L. Ryan, Angela Tate, David Pink, and Paul Dubin. 2010. Protein Specificity of Charged Sequences in Polyanions and Heparins. Biomacromolecules. 11:3325-3331.

Gillian L. Ryan and Andrew D. Rutenberg. 2007. Clocking out: modeling phage-induced lysis of E. coli. Journal of Bacteriology. 189:4749-4755.

D.A. Pink, C.B. Hanna, B.E. Quinn, V. Levadny, G.L. Ryan, L. Filion, and A.T. Paulson. 2006. Modeling electrostatic interactions in complex soft systems. Food Research International 39:1031-1045.

Michael O. Steinitz, G. Shane MacLeod, David A. Pink, Bonnie Quinn, and Gillian L. Ryan. 2004. Magnetoelasticity and the spin rotation transition in cobalt. Canadian Journal of Physics. 82:1077-1084.


Ramabadran, U., Ryan, G.L., Zhou, X., Farhat, S., Ayler, R., and Tong, Y. 2015. Synthesis of reduced graphene oxide films using atmospheric plasma annealing NSTI: Advanced Materials – TechConnect Briefs 1:161-164.


D. Holz, L. M. McMillen, G. L. Ryan, and D. Vavylonis, “Lamellipodia in Stationary and Fluctuating Steady States,” Springer volume “Cell movement: Modeling and Applications” pages 211-258 (2018)