Tya S. Chuanromanee, Jim I. Cohen, and Gillian L. Ryan. 2019. Morphological Analysis of Size and Shape (MASS): An integrative software program for morphometric analyses of leaves. Accepted by Applications in Plant Sciences.
Source code can be found here:

Uma Ramabadran, Gillian Ryan, Xuan Zhou, Susan Farhat, Felicia Manciu, Yigang Tong, Ryan Ayler, and Graham Garner. 2017. Reduced Graphene Oxide on Nickel Foam for Supercapacitor Electrodes. Energy Materials. 10: 1295.

Gillian L. Ryan, Danielle Holz, Sawako Yamashiro, Daisuke Taniguchi, Naoki Watanabe, and Dimitrios Vavylonis. 2017. Cell Protrusion and Retraction Driven by Fluctuations in Actin Polymerization: A Two-Dimensional Model. Cytoskeleton. 74:490-503.

Sawako Yamashiro, Hiroaki Mizuno, Matthew B. Smith, Gillian L. Ryan, Tai Kiuchi, Dimitrios Vavylonis, and Naoki Watanabe. 2014. New single-molecule speckle microscopy reveals modification of the retrograde actin flow by focal adhesions at nanometer scales. Mol. Biol. Cell. 25:1010-1024.

Gillian L. Ryan, Naoki Watanabe, and Dimitrios Vavylonis. 2013. Image Analysis Tools to Quantify Cell Shape and Protein Dynamics near the Leading Edge. Cell Structure and Function. 19:1-7.

Gillian L. Ryan, Naoki Watanabe, and Dimitrios Vavylonis. 2012. A review of models of fluctuating protrusion and retraction patterns at the leading edge of motile cells. Cytoskeleton. 69: 195-206.

Gillian L. Ryan, Heather M. Petroccia, Naoki Watanabe, and Dimitrios Vavylonis. 2012. Excitable Actin Dynamics in Lamellipodial Protrusion and Retraction. Biophysical Journal 102: 1493-1502.

A. Kayitmazer, Bonnie Quinn, Kozue Kimura, Gillian L. Ryan, Angela Tate, David Pink, and Paul Dubin. 2010. Protein Specificity of Charged Sequences in Polyanions and Heparins. Biomacromolecules. 11:3325-3331.

Gillian L. Ryan and Andrew D. Rutenberg. 2007. Clocking out: modeling phage-induced lysis of E. coli. Journal of Bacteriology. 189:4749-4755.

D.A. Pink, C.B. Hanna, B.E. Quinn, V. Levadny, G.L. Ryan, L. Filion, and A.T. Paulson. 2006. Modeling electrostatic interactions in complex soft systems. Food Research International 39:1031-1045.

Michael O. Steinitz, G. Shane MacLeod, David A. Pink, Bonnie Quinn, and Gillian L. Ryan. 2004. Magnetoelasticity and the spin rotation transition in cobalt. Canadian Journal of Physics. 82:1077-1084.


Ramabadran, U., Ryan, G.L., Zhou, X., Farhat, S., Ayler, R., and Tong, Y. 2015. Synthesis of reduced graphene oxide films using atmospheric plasma annealing NSTI: Advanced Materials – TechConnect Briefs 1:161-164.


D. Holz, L. M. McMillen, G. L. Ryan, and D. Vavylonis, “Lamellipodia in Stationary and Fluctuating Steady States,” Springer volume “Cell movement: Modeling and Applications” pages 211-258 (2018)